Report for Sequence Feature Glyma10g39660
Feature Type: gene_model
Chromosome: Gm10
Start: 47286592
stop: 47288492
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma10g39660
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G19260 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3049) | chr5:6479494-6480360 REVERSE LENGTH=288
SoyBase E_val: 6.00E-28 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PF11250 PFAM
Protein of unknown function (DUF3049)
JGI ISS
UniRef100_I1LE76 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LE76_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q6NMR8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Protein FANTASTIC FOUR 3 n=1 Tax=Arabidopsis thaliana RepID=FAF3_ARATH
SoyBase E_val: 3.00E-25 ISS
Expression Patterns of Glyma10g39660
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma10g39660
Paralog Evidence Comments
Glyma20g28100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma10g39660 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.10g250700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma10g39660
Coding sequences of Glyma10g39660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma10g39660.1 sequence type=CDS gene model=Glyma10g39660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGCAATTGTGCACCACGGATTGCAGTCACACCTTGAGTCCCAACACACTGAGTCAATAGCACTCAAACTGAGGCTCCCTTCCTCAAAACCACCCCTTCCTCAACTCATTGATTTAGCCTTCAAACCCTCTTTCTGGGATTCAAGTTCAACCATCAAACCCCACAGCGAAGAAAACAATAACAACAAGAAGTCCACACCCGCAAACCCCAATTCTTGGAGCTTCCGCGAAGCACTCTCCAACGTCACAAAAGAACCATCACAGAACCAAACCACCTACGTGCACCCTCAGCAGAAACGCTTCTCCCTGAGCCTCAGTCCAAAGAGCCTCCAGCTGTGCACCGAAAACCTCGGAAACGAAAGTGGCAGCGACAGTGGCAGTGACAGTGATGAAAACAGCATTGACATGTTCTCCTCAGTGAACGGGAATTCGGGGACAAGGGAACAAACCCAACAAAGGCAACCTCGTCAACTTTCGACAGCGAAGAAAGCGAAAACCCAGAACTTTCCACCCCCTTTGACAACGATAAGGGGGGGATCAGAATCTCTTCGCGTGAGACCTCACCGCGAAGATGGACGGCTAGTGATTGAAGTCACCAAGGTCCCACCTAGTTCCTCGTGCTTTCATGCTGAACGAAGCCATGGCCGCCTTCGCCTCTGCTTTCTGACAAACCACACTCCAAGTTTTGAGACGGAAGCAGCAGCAGAAGAAGAAGATGACGTTGAAGAAAAAGAACCATTCGTCAATGATAAAGGATTCGAAAACGAAATAGGTGGACAAGTAAAAGACACTACCAAAGAAGAACAAGAGGAAACAGAGGACGAAACAGGGGAGGAAGAAGAACAAGATGAGGAATGTGTTGCATGTGGGTATGTGAAGAGTGATGTCATTATCATGGAAAAGTACGAGAGGCTGAGAAGGTGCAAAGAAGGTGGTGACCACGAGAACTATGAATTTTTAAATTGGAGTGAGCCACGTTTGGTGGCTACTTCGTAA
Predicted protein sequences of Glyma10g39660
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma10g39660.1 sequence type=predicted peptide gene model=Glyma10g39660 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAAIVHHGLQSHLESQHTESIALKLRLPSSKPPLPQLIDLAFKPSFWDSSSTIKPHSEENNNNKKSTPANPNSWSFREALSNVTKEPSQNQTTYVHPQQKRFSLSLSPKSLQLCTENLGNESGSDSGSDSDENSIDMFSSVNGNSGTREQTQQRQPRQLSTAKKAKTQNFPPPLTTIRGGSESLRVRPHREDGRLVIEVTKVPPSSSCFHAERSHGRLRLCFLTNHTPSFETEAAAEEEDDVEEKEPFVNDKGFENEIGGQVKDTTKEEQEETEDETGEEEEQDEECVACGYVKSDVIIMEKYERLRRCKEGGDHENYEFLNWSEPRLVATS*
SoyBase
Follow us on Twitter @SoyBaseDatabase
